Stem molecular$ (all stems)

52 papers:

SAC-2015-HublerRFS #data flow #named #using

P-SaMI: a data-flow pattern to perform massively-parallel molecular docking experiments using a fully-flexible receptor model (PH, DDAR, JEF, ONdS), pp. 54–57.

ASPLOS-2015-PangDL #less is more

More is Less, Less is More: Molecular-Scale Photonic NoC Power Topologies (JP, CD, ARL), pp. 283–296.

ASE-2014-EllisHKLLLMM #analysis #automation #requirements

Automated requirements analysis for a molecular watchdog timer (SJE, ERH, THK, JIL, JHL, RRL, DM, ASM), pp. 767–778.

SAC-2014-SeelandKK #clustering #graph

Structural clustering of millions of molecular graphs (MS, AK, SK), pp. 121–128.

SAC-2013-PerazzoWM #framework

A data warehouse as an infrastructure to mine molecular descriptors for virtual screening (GXP, ATW, KSM), pp. 1335–1336.

CHI-2012-TabardHB #biology

The eLabBench in the wild: supporting exploration in a molecular biology lab (AT, JDHR, JB), pp. 3051–3060.

ICPR-2012-SuryantoJF #3d #image #multi #similarity #visualisation

Protein structure similarity based on multi-view images generated from 3D molecular visualization (CHS, SJ, KF), pp. 3447–3451.

SAC-2012-Koohi-MoghadamR #difference #evolution

Molecular docking with opposition-based differential evolution (MKM, ATR), pp. 1387–1392.

DAC-2011-JiangRP

Synchronous sequential computation with molecular reactions (HJ, MDR, KKP), pp. 836–841.

CASE-2010-KumarKST #predict #programming

A mathematical programming for predicting molecular formulas in accurate mass spectrometry (SK, MK, RS, KT), pp. 246–251.

HPDC-2010-DiasBG

CUDA-based triangulations of convolution molecular surfaces (SD, KB, AJPG), pp. 531–540.

HCI-VAD-2009-EssabbahOHM #analysis #approach #design #interactive

A New Approach to Design an Interactive System for Molecular Analysis (ME, SO, JH, MM), pp. 713–722.

KDIR-2009-Schommer #community

An Artificial Molecular Model to Foster Communities (CS), pp. 219–222.

SAC-2009-LavorLMM #distance #geometry #on the #problem #subclass

On a discretizable subclass of instances of the molecular distance geometry problem (CL, LL, AM, NM), pp. 804–805.

SAC-2009-PostarnakevichS #modelling #representation #using #visualisation

Global-to-local representation and visualization of molecular surfaces using deformable models (NP, RS), pp. 782–787.

SAC-2008-LiZC #case study #mining

Mining disease-specific molecular association profiles from biomedical literature: a case study (JL, XZ, JYC), pp. 1287–1291.

ASPLOS-2008-Winfree #programming #towards

Toward molecular programming with DNA (EW), p. 1.

HPCA-2008-KuskinYGBDDS #flexibility #simulation

Incorporating flexibility in Anton, a specialized machine for molecular dynamics simulation (JK, CY, JPG, BB, MMD, ROD, DES), pp. 343–354.

HPCA-2008-LarsonSDDYGSKS #interactive #simulation

High-throughput pairwise point interactions in Anton, a specialized machine for molecular dynamics simulation (RHL, JKS, ROD, MMD, CY, JPG, YS, JLK, DES), pp. 331–342.

ICGT-2006-EhrigHL #analysis #graph transformation

Molecular Analysis of Metabolic Pathway with Graph Transformation (KE, RH, GL), pp. 107–121.

ICML-2006-EngelhardtJB #predict #visual notation

A graphical model for predicting protein molecular function (BEE, MIJ, SEB), pp. 297–304.

GPCE-2006-ReederG #programming #visual notation

A graphical programming system for molecular motif search (JR, RG), pp. 131–140.

PPoPP-2006-AlamVAG #performance #simulation

Performance characterization of molecular dynamics techniques for biomolecular simulations (SRA, JSV, PKA, AG), pp. 59–68.

ICML-2005-FrohlichWSZ #graph #kernel

Optimal assignment kernels for attributed molecular graphs (HF, JKW, FS, AZ), pp. 225–232.

HPDC-2005-WozniakBTSI #grid #simulation

Generosity and gluttony in GEMS: grid enabled molecular simulations (JMW, PB, DT, AS, JAI), pp. 191–200.

KR-2004-TranB #interactive #prolog #reasoning

Reasoning about Triggered Actions in AnsProlog and Its Application to Molecular Interactions in Cells (NT, CB), pp. 554–564.

DAC-2003-AmlaniZTNT #component

Manipulation and characterization of molecular scale components (IA, RZ, JT, LN, RKT), pp. 276–277.

VLDB-2003-SrinivasaK #analysis #framework #multi

A Platform Based on the Multi-dimensional Data Model for Analysis of Bio-Molecular Structures (SS, SK), pp. 975–986.

ESOP-2003-DanosL #biology

Core Formal Molecular Biology (VD, CL), pp. 302–318.

CIAA-2003-UnoldTDT #finite

Finite-State Molecular Computing (OU, MT, TD, AT), pp. 309–310.

SAC-2003-MaI #using

Long Time Step Molecular Dynamics using Targeted Langevin Stabilization (QM, JAI), pp. 178–182.

SAC-2003-MaIS #multi

Nonlinear Instability in Multiple Time Stepping Molecular Dynamics (QM, JAI, RDS), pp. 167–171.

ICALP-2002-Reif #assembly

Molecular Assembly and Computation: From Theory to Experimental Demonstrations (JHR), pp. 1–21.

HPDC-2002-BalaPNAGEMMBM #biology #grid #named

BioGRID — An European Grid for Molecular Biology (PB, JP, MN, VA, DG, DWE, DM, JM, JB, JFM), p. 412.

KDD-2001-KramerRH #mining

Molecular feature mining in HIV data (SK, LDR, CH), pp. 136–143.

HPDC-2000-NolteH #biology #case study #distributed #parallel #research #sorting

Parallel Matching and Sorting with TACO’s Distributed Collections — A Case Study from Molecular Biology Research (JN, PH), pp. 247–252.

STOC-1999-SchulmanV99a #quantum #scalability

Molecular Scale Heat Engines and Scalable Quantum Computation (LJS, UVV), pp. 322–329.

ICALP-1998-AkutsuY #biology #complexity #on the #problem

On the Complexity of Deriving Score Functions from Examples for Problems in Molecular Biology (TA, MY), pp. 832–843.

SAC-1998-LisleP #modelling #object-oriented #recursion

Recursive, object-oriented structures for molecular modeling (CL, RJP), pp. 50–54.

ICALP-1997-BeigelF #bound #nondeterminism #performance #recursion

Molecular Computing, Bounded Nondeterminism, and Efficient Recursion (RB, BF), pp. 816–826.

OOPSLA-1997-OlerLC #biology #experience #lessons learnt #migration #relational

Migrating Relational Data to an OODB: Strategies and Lessons from a Molecular Biology Experience (JRO, GL, TC), pp. 243–252.

ICPR-1996-SharmaHPZLCS #gesture #interface #speech #visual notation

Speech/gesture interface to a visual computing environment for molecular biologists (RS, TSH, VIP, YZ, ZL, SMC, KS), pp. 964–968.

DAC-1994-BenedettoLSY #problem

Chain Closure: A Problem in Molecular CAD (MDDB, PL, ALSV, KY), pp. 497–502.

SAC-1994-Duben #simulation

The effect of the choice of motional model in the determination of molecular conformation in solution from NMR-NOESY spectra: a simulation study (AJD), pp. 561–565.

SAC-1994-XiaoW #algorithm #search-based #using

Molecular docking using genetic algorithms (YLX, DEW), pp. 196–200.

HPDC-1994-EisenhauerSGM #interactive #named #online #parallel #source code #towards

Falcon — Toward Interactive Parallel Programs: The On-line Steering of a Molecular Dynamics Application (GE, KS, WG, NM), pp. 26–33.

STOC-1993-Karp #biology #combinator #problem

Mapping the genome: some combinatorial problems arising in molecular biology (RMK), pp. 278–285.

CIKM-1993-HaasAO #biology #database #information management #reasoning

Analogical Reasoning for Knowledge Discovery in a Molecular Biology Database (JH, JSA, GCO), pp. 554–564.

SAC-1993-ChenD #biology

Distributing Molecular Biology Information: Gopher, WAIS and the University of Houston Gene-Server (ESC, DBD), pp. 634–640.

ILPS-1993-LuskMOS #biology #parallel #prolog

Applications of the Aurora Parallel Prolog System to Computational Molecular Biology (ELL, SM, RAO, PS), pp. 353–369.

CHI-1992-FerrinHCPL #modelling

The MidasPlus molecular modeling system (TEF, CCH, GSC, EFP, RL), pp. 521–522.

VLDB-1984-BatoryB #data type #framework #modelling

Molecular Objects, Abstract Data Types, and Data Models: A Framework (DSB, APB), pp. 172–184.