BibSLEIGH
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Stem genom$ (all stems)

62 papers:

SACSAC-2015-FahnrichSP #database #identification #in memory #search-based
Facing the genome data deluge: efficiently identifying genetic variants with in-memory database technology (CF, MPS, HP), pp. 18–25.
SIGMODSIGMOD-2014-TaftVSSMS #benchmark #metric #named
GenBase: a complex analytics genomics benchmark (RT, MV, NRS, NS, SM, MS), pp. 177–188.
SACSAC-2014-CruzBZCC #case study #metadata #workflow
Collecting cloud provenance metadata with Matriohska: a case study with genomic workflows (SMSdC, LMMB, JZ, RMC, MLMC), pp. 351–356.
CAVCAV-2014-PaolettiYHWK #logic
Analyzing and Synthesizing Genomic Logic Functions (NP, BY, YH, CMW, HK), pp. 343–357.
VLDBVLDB-2013-WandeltSBL #named #scalability #similarity
RCSI: Scalable similarity search in thousand(s) of genomes (SW, JS, MB, UL), pp. 1534–1545.
LATALATA-2013-BenzaidDE #algorithm #complexity
Duplication-Loss Genome Alignment: Complexity and Algorithm (BB, RD, NEM), pp. 116–127.
KDDKDD-2013-JohnsonS #data analysis #privacy
Privacy-preserving data exploration in genome-wide association studies (AJ, VS), pp. 1079–1087.
VLDBVLDB-2012-RoyDMSW #analysis
Massive Genomic Data Processing and Deep Analysis (AR, YD, EM, YS, BLW), pp. 1906–1909.
CIKMCIKM-2012-DragutOMMBS
Lonomics Atlas: a tool to explore interconnected ionomic, genomic and environmental data (ECD, MO, AM, NM, PB, DES), pp. 2680–2682.
ICPRICPR-2012-UddinCKS #using
Accurate genomic signal recovery using compressed sensing (BU, MEC, HAK, GS), pp. 3144–3147.
KDIRKDIR-2012-WandeltL #string
String Searching in Referentially Compressed Genomes (SW, UL), pp. 95–102.
SACSAC-2012-DiasDHS #sorting #symmetry #using
Sorting genomes using almost-symmetric inversions (ZD, UD, LSH, JCS), pp. 1368–1374.
CHICHI-2011-ShaerSVFLW #interactive #learning
Enhancing genomic learning through tabletop interaction (OS, MS, CV, TF, ML, HW), pp. 2817–2826.
KDDKDD-2011-Haussler
Cancer genomics (DH), pp. 3–4.
CHICHI-2010-ShaerKSFGE #collaboration #interface
G-nome surfer: a tabletop interface for collaborative exploration of genomic data (OS, GK, MS, CF, CG, SE), pp. 1427–1436.
KDIRKDIR-2010-Pastor #challenge #concept #modelling
Conceptual Modeling for the Human Genome Challenge (OP), p. 11.
PPoPPPPoPP-2010-SandesM #comparison #gpu #named #sequence #using
CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences (EFdOS, ACMAdM), pp. 137–146.
CIKMCIKM-2009-BarskySTU #scalability #sequence
Suffix trees for very large genomic sequences (MB, US, AT, CU), pp. 1417–1420.
CIKMCIKM-2008-BarskySTU #using
A new method for indexing genomes using on-disk suffix trees (MB, US, AT, CU), pp. 649–658.
CIKMCIKM-2008-UrbainFG #modelling
Passage relevance models for genomics search (JU, OF, NG), pp. 1357–1358.
KDDKDD-2008-ZhangZW #algorithm #named #performance
Fastanova: an efficient algorithm for genome-wide association study (XZ, FZ, WW), pp. 821–829.
SIGIRSIGIR-2008-HuH #ranking
A reranking model for genomics aspect search (QH, XH), pp. 783–784.
SACSAC-2008-MitrofanovaM #evolution #modelling #simulation
Population genetics of human copy number variations: models and simulation of their evolution along and across the genomes (AM, BM), pp. 1309–1310.
CASECASE-2007-JiangLCHHS #automation #development #framework
Development of Whole Human Genome Micro-array Automated Hybridization Platform (JYJ, KHL, CCC, JLH, CHH, HJS), pp. 640–645.
SIGMODSIGMOD-2007-PhoophakdeeZ
Genome-scale disk-based suffix tree indexing (BP, MJZ), pp. 833–844.
ITiCSEITiCSE-2007-MarraHW #case study #tool support
A study of phylogenetic tools for genomic nomenclature data cleaning (JDM, KGH, JTLW), p. 347.
SACSAC-2007-JinC #graph
Hierarchical alignment graph for gene teams finding on whole genomes (HJJ, HGC), pp. 113–117.
CIAACIAA-2006-GiraudVL #automaton #finite
Path-Equivalent Removals of epsilon-transitions in a Genomic Weighted Finite Automaton (MG, PV, DL), pp. 23–33.
ECIRECIR-2006-BernsteinC #performance #scalability #sequence
Fast Discovery of Similar Sequences in Large Genomic Collections (YB, MC), pp. 432–443.
ECIRECIR-2006-ZhouZH #approach #concept #information retrieval #modelling #using
Using Concept-Based Indexing to Improve Language Modeling Approach to Genomic IR (XZ, XZ, XH), pp. 444–455.
KDDKDD-2006-ChenHLN #interactive #named #network
NeMoFinder: dissecting genome-wide protein-protein interactions with meso-scale network motifs (JC, WH, MLL, SKN), pp. 106–115.
SIGIRSIGIR-2006-ZhouHZLS #approach #information retrieval #modelling #semantics
Context-sensitive semantic smoothing for the language modeling approach to genomic IR (XZ, XH, XZ, XL, IYS), pp. 170–177.
PADLPADL-2006-ErwigK #evolution #modelling #probability #programming
Modeling Genome Evolution with a DSEL for Probabilistic Programming (ME, SK), pp. 134–149.
VLDBVLDB-2005-MarkowitzKPSIK #biology #case study #data transformation
The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management (VMM, FK, KP, ES, NI, NK), pp. 1067–1078.
ICMLICML-2005-SonnenburgRS #classification #scalability #sequence
Large scale genomic sequence SVM classifiers (SS, GR, BS), pp. 848–855.
SACSAC-2005-FalcoTCG #algorithm #clustering #search-based
A new variable-length genome genetic algorithm for data clustering in semeiotics (IDF, ET, ADC, FG), pp. 923–927.
SACSAC-2005-LeeST #database #performance
Efficient discovery of unique signatures on whole-genome EST databases (HPL, TFS, YTT), pp. 100–104.
SACSAC-2005-RobinsonRHD #automation #database
User-defined view automation of genomic databases (AJR, JWR, SH, TSD), pp. 671–675.
VLDBVLDB-2004-BloomS #case study #data transformation
Managing Data from High-Throughput Genomic Processing: A Case Study (TB, TS), pp. 1198–1201.
ITiCSEITiCSE-WGR-2004-LeBlancD #education #why
Bioinformatics and computing curricula 2001: why computer science is well positioned in a post-genomic world (MDL, BDD), pp. 64–68.
CIKMCIKM-2004-SongB #algorithm #detection #effectiveness #named #performance
BioDIFF: an effective fast change detection algorithm for genomic and proteomic data (YS, SSB), pp. 146–147.
SACSAC-2004-Guo #algorithm #clustering #evaluation #framework #functional
A new framework for clustering algorithm evaluation in the domain of functional genomics (AG), pp. 143–146.
SACSAC-2004-KasturiA #clustering #using
Clustering of diverse genomic data using information fusion (JK, RA), pp. 116–120.
SACSAC-2004-MateosSA #segmentation
Evolutionary segmentation of yeast genome (DM, JCRS, JSAR), pp. 1026–1027.
PADLPADL-2003-ClareK #data mining #functional #lazy evaluation #mining
Data Mining the Yeast Genome in a Lazy Functional Language (AC, RDK), pp. 19–36.
VLDBVLDB-2002-LaudBCSR #framework #programmable #prototype
The gRNA: A Highly Programmable Infrastructure for Prototyping, Developing and Deploying Genomics-Centric Applications (AVL, SSB, PC, DTS, GR), pp. 928–939.
VLDBVLDB-2001-PatonG #information management
Information Management for Genome Level Bioinformatics (NWP, CAG).
STOCSTOC-2001-WangW
Estimating true evolutionary distances between genomes (LSW, TW), pp. 637–646.
ICMLICML-2001-XingJK #array #feature model
Feature selection for high-dimensional genomic microarray data (EPX, MIJ, RMK), pp. 601–608.
SACSAC-2001-Grigoriev #identification
Computational structural genomics: identifying protein targets for structural studies (IVG), pp. 41–45.
ICALPICALP-2000-Karp #algorithm #challenge #research
The Genomics Revolution and Its Challenges for Algorithmic Research (RMK), p. 428.
KDDKDD-2000-KingKCD #data mining #functional #mining #predict #sequence #using
Genome scale prediction of protein functional class from sequence using data mining (RDK, AK, AC, LD), pp. 384–389.
SACSAC-2000-HuangHBL #design
Genome-wide Polymerase Chain Reaction Primer Design (HHH, GEH, RB, HL), pp. 65–74.
PADLPADL-1999-BansalB #functional #logic programming #novel
Applying Logic Programming to Derive Novel Functional Information of Genomes (AKB, PB), pp. 275–289.
ICPRICPR-1998-WatanabeT #2d #analysis #image
An analysis system for two-dimensional gel electrophoresis images of genomic DNA (YW, KT), pp. 368–371.
SIGIRSIGIR-1998-Williams #approach #database #named
Cafe: An Indexed Approach to Searching Genomic Databases (HEW), p. 389.
PODSPODS-1995-Goodman #database #problem #research
Research Problems in Genome Databases (NG), p. 125.
CIKMCIKM-1994-DavidsonKE #database
Facilitating Transformations in a Human Genome Project Database (SBD, AK, BAE), pp. 423–432.
STOCSTOC-1993-Karp #biology #combinator #problem
Mapping the genome: some combinatorial problems arising in molecular biology (RMK), pp. 278–285.
CIKMCIKM-1993-LeeRTL #assembly #representation
An Information Model for Human Genome Map Representation and Assembly (AJL, EAR, ST, SL), pp. 75–84.
SACSAC-1993-PelkeyTTLD #gnome #representation #visual notation
Gnome View: A Tool for Visual Representation of Human Genome Data (JEP, GST, DAT, VBL, RJD), pp. 21–27.
SIGMODSIGMOD-1990-Pecherer #database
Database Management Issues of the Human Genome Project (RMP), p. 397.

Bibliography of Software Language Engineering in Generated Hypertext (BibSLEIGH) is created and maintained by Dr. Vadim Zaytsev.
Hosted as a part of SLEBOK on GitHub.