Stem genom$ (all stems)

62 papers:

SAC-2015-FahnrichSP #database #identification #in memory #search-based

Facing the genome data deluge: efficiently identifying genetic variants with in-memory database technology (CF, MPS, HP), pp. 18–25.

SIGMOD-2014-TaftVSSMS #benchmark #metric #named

GenBase: a complex analytics genomics benchmark (RT, MV, NRS, NS, SM, MS), pp. 177–188.

SAC-2014-CruzBZCC #case study #metadata #workflow

Collecting cloud provenance metadata with Matriohska: a case study with genomic workflows (SMSdC, LMMB, JZ, RMC, MLMC), pp. 351–356.

CAV-2014-PaolettiYHWK #logic

Analyzing and Synthesizing Genomic Logic Functions (NP, BY, YH, CMW, HK), pp. 343–357.

VLDB-2013-WandeltSBL #named #scalability #similarity

RCSI: Scalable similarity search in thousand(s) of genomes (SW, JS, MB, UL), pp. 1534–1545.

LATA-2013-BenzaidDE #algorithm #complexity

Duplication-Loss Genome Alignment: Complexity and Algorithm (BB, RD, NEM), pp. 116–127.

KDD-2013-JohnsonS #data analysis #privacy

Privacy-preserving data exploration in genome-wide association studies (AJ, VS), pp. 1079–1087.

VLDB-2012-RoyDMSW #analysis

Massive Genomic Data Processing and Deep Analysis (AR, YD, EM, YS, BLW), pp. 1906–1909.

CIKM-2012-DragutOMMBS

Lonomics Atlas: a tool to explore interconnected ionomic, genomic and environmental data (ECD, MO, AM, NM, PB, DES), pp. 2680–2682.

ICPR-2012-UddinCKS #using

Accurate genomic signal recovery using compressed sensing (BU, MEC, HAK, GS), pp. 3144–3147.

KDIR-2012-WandeltL #string

String Searching in Referentially Compressed Genomes (SW, UL), pp. 95–102.

SAC-2012-DiasDHS #sorting #symmetry #using

Sorting genomes using almost-symmetric inversions (ZD, UD, LSH, JCS), pp. 1368–1374.

CHI-2011-ShaerSVFLW #interactive #learning

Enhancing genomic learning through tabletop interaction (OS, MS, CV, TF, ML, HW), pp. 2817–2826.

KDD-2011-Haussler

Cancer genomics (DH), pp. 3–4.

CHI-2010-ShaerKSFGE #collaboration #interface

G-nome surfer: a tabletop interface for collaborative exploration of genomic data (OS, GK, MS, CF, CG, SE), pp. 1427–1436.

KDIR-2010-Pastor #challenge #concept #modelling

Conceptual Modeling for the Human Genome Challenge (OP), p. 11.

PPoPP-2010-SandesM #comparison #gpu #named #sequence #using

CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences (EFdOS, ACMAdM), pp. 137–146.

CIKM-2009-BarskySTU #scalability #sequence

Suffix trees for very large genomic sequences (MB, US, AT, CU), pp. 1417–1420.

CIKM-2008-BarskySTU #using

A new method for indexing genomes using on-disk suffix trees (MB, US, AT, CU), pp. 649–658.

CIKM-2008-UrbainFG #modelling

Passage relevance models for genomics search (JU, OF, NG), pp. 1357–1358.

KDD-2008-ZhangZW #algorithm #named #performance

Fastanova: an efficient algorithm for genome-wide association study (XZ, FZ, WW), pp. 821–829.

SIGIR-2008-HuH #ranking

A reranking model for genomics aspect search (QH, XH), pp. 783–784.

SAC-2008-MitrofanovaM #evolution #modelling #simulation

Population genetics of human copy number variations: models and simulation of their evolution along and across the genomes (AM, BM), pp. 1309–1310.

CASE-2007-JiangLCHHS #automation #development #framework

Development of Whole Human Genome Micro-array Automated Hybridization Platform (JYJ, KHL, CCC, JLH, CHH, HJS), pp. 640–645.

SIGMOD-2007-PhoophakdeeZ

Genome-scale disk-based suffix tree indexing (BP, MJZ), pp. 833–844.

ITiCSE-2007-MarraHW #case study #tool support

A study of phylogenetic tools for genomic nomenclature data cleaning (JDM, KGH, JTLW), p. 347.

SAC-2007-JinC #graph

Hierarchical alignment graph for gene teams finding on whole genomes (HJJ, HGC), pp. 113–117.

CIAA-2006-GiraudVL #automaton #finite

Path-Equivalent Removals of epsilon-transitions in a Genomic Weighted Finite Automaton (MG, PV, DL), pp. 23–33.

ECIR-2006-BernsteinC #performance #scalability #sequence

Fast Discovery of Similar Sequences in Large Genomic Collections (YB, MC), pp. 432–443.

ECIR-2006-ZhouZH #approach #concept #information retrieval #modelling #using

Using Concept-Based Indexing to Improve Language Modeling Approach to Genomic IR (XZ, XZ, XH), pp. 444–455.

KDD-2006-ChenHLN #interactive #named #network

NeMoFinder: dissecting genome-wide protein-protein interactions with meso-scale network motifs (JC, WH, MLL, SKN), pp. 106–115.

SIGIR-2006-ZhouHZLS #approach #information retrieval #modelling #semantics

Context-sensitive semantic smoothing for the language modeling approach to genomic IR (XZ, XH, XZ, XL, IYS), pp. 170–177.

PADL-2006-ErwigK #evolution #modelling #probability #programming

Modeling Genome Evolution with a DSEL for Probabilistic Programming (ME, SK), pp. 134–149.

VLDB-2005-MarkowitzKPSIK #biology #case study #data transformation

The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management (VMM, FK, KP, ES, NI, NK), pp. 1067–1078.

ICML-2005-SonnenburgRS #classification #scalability #sequence

Large scale genomic sequence SVM classifiers (SS, GR, BS), pp. 848–855.

SAC-2005-FalcoTCG #algorithm #clustering #search-based

A new variable-length genome genetic algorithm for data clustering in semeiotics (IDF, ET, ADC, FG), pp. 923–927.

SAC-2005-LeeST #database #performance

Efficient discovery of unique signatures on whole-genome EST databases (HPL, TFS, YTT), pp. 100–104.

SAC-2005-RobinsonRHD #automation #database

User-defined view automation of genomic databases (AJR, JWR, SH, TSD), pp. 671–675.

VLDB-2004-BloomS #case study #data transformation

Managing Data from High-Throughput Genomic Processing: A Case Study (TB, TS), pp. 1198–1201.

ITiCSE-WGR-2004-LeBlancD #education #why

Bioinformatics and computing curricula 2001: why computer science is well positioned in a post-genomic world (MDL, BDD), pp. 64–68.

CIKM-2004-SongB #algorithm #detection #effectiveness #named #performance

BioDIFF: an effective fast change detection algorithm for genomic and proteomic data (YS, SSB), pp. 146–147.

SAC-2004-Guo #algorithm #clustering #evaluation #framework #functional

A new framework for clustering algorithm evaluation in the domain of functional genomics (AG), pp. 143–146.

SAC-2004-KasturiA #clustering #using

Clustering of diverse genomic data using information fusion (JK, RA), pp. 116–120.

SAC-2004-MateosSA #segmentation

Evolutionary segmentation of yeast genome (DM, JCRS, JSAR), pp. 1026–1027.

PADL-2003-ClareK #data mining #functional #lazy evaluation #mining

Data Mining the Yeast Genome in a Lazy Functional Language (AC, RDK), pp. 19–36.

VLDB-2002-LaudBCSR #framework #programmable #prototype

The gRNA: A Highly Programmable Infrastructure for Prototyping, Developing and Deploying Genomics-Centric Applications (AVL, SSB, PC, DTS, GR), pp. 928–939.

VLDB-2001-PatonG #information management

Information Management for Genome Level Bioinformatics (NWP, CAG).

STOC-2001-WangW

Estimating true evolutionary distances between genomes (LSW, TW), pp. 637–646.

ICML-2001-XingJK #array #feature model

Feature selection for high-dimensional genomic microarray data (EPX, MIJ, RMK), pp. 601–608.

SAC-2001-Grigoriev #identification

Computational structural genomics: identifying protein targets for structural studies (IVG), pp. 41–45.

ICALP-2000-Karp #algorithm #challenge #research

The Genomics Revolution and Its Challenges for Algorithmic Research (RMK), p. 428.

KDD-2000-KingKCD #data mining #functional #mining #predict #sequence #using

Genome scale prediction of protein functional class from sequence using data mining (RDK, AK, AC, LD), pp. 384–389.

SAC-2000-HuangHBL #design

Genome-wide Polymerase Chain Reaction Primer Design (HHH, GEH, RB, HL), pp. 65–74.

PADL-1999-BansalB #functional #logic programming #novel

Applying Logic Programming to Derive Novel Functional Information of Genomes (AKB, PB), pp. 275–289.

ICPR-1998-WatanabeT #2d #analysis #image

An analysis system for two-dimensional gel electrophoresis images of genomic DNA (YW, KT), pp. 368–371.

SIGIR-1998-Williams #approach #database #named

Cafe: An Indexed Approach to Searching Genomic Databases (HEW), p. 389.

PODS-1995-Goodman #database #problem #research

Research Problems in Genome Databases (NG), p. 125.

CIKM-1994-DavidsonKE #database

Facilitating Transformations in a Human Genome Project Database (SBD, AK, BAE), pp. 423–432.

STOC-1993-Karp #biology #combinator #problem

Mapping the genome: some combinatorial problems arising in molecular biology (RMK), pp. 278–285.

CIKM-1993-LeeRTL #assembly #representation

An Information Model for Human Genome Map Representation and Assembly (AJL, EAR, ST, SL), pp. 75–84.

SAC-1993-PelkeyTTLD #gnome #representation #visual notation

Gnome View: A Tool for Visual Representation of Human Genome Data (JEP, GST, DAT, VBL, RJD), pp. 21–27.

SIGMOD-1990-Pecherer #database

Database Management Issues of the Human Genome Project (RMP), p. 397.